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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18178184_18180214_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18178184 - 18180214
Intron Length:
2031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTCTCTTACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
84
27.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
87
0.83
0.7
80.9
30.5
Minor 5ss
43.2
-0.7
3.3
64.8
46.5
Minor BPS
55.6
0.04
1.8
65.72
41.9

Associated Gene:

Gene:
LINS1
Ensembl Gene ID:
ENSAPLG00000006710
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018985
18170321 - 18181267
10947
ENSAPLT00000006965
18170321 - 18180540
10220