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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18178184_18180986_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18178184 - 18180986
Intron Length:
2803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
ATTTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTTCTCTTACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60.4
45.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
87
0.83
0.7
80.9
30.5
Minor 5ss
25.8
-2.8
2.9
22.4
37.3
Minor BPS
55.6
0.04
1.8
65.72
41.9

Associated Gene:

Gene:
LINS1
Ensembl Gene ID:
ENSAPLG00000006710
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041193
18170321 - 18181267
10947