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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18190773_18208811_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18190773 - 18208811
Intron Length:
18039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
ATCATTTTACTT
Flanking Amino Acid:
RCVRVFLEHGGQPRNLQDLC
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
90.6
0.91
0.7
88.7
28.3
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
50.1
0.08
1.6
65.7
40

Associated Gene:

Gene:
ASB7
Ensembl Gene ID:
ENSAPLG00000006684
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038580
18181668 - 18208951
27284