About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18251715_18260464_F

Intron Information:

Intron Rank:
141910
Intron Class:
major
Intron Phase:
Intron Coordinates:
18251715 - 18260464
Intron Length:
8750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TCCTTCTGTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
74.7
35.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.8
0.4
1.1
67
38.4
Minor 5ss
37.8
-1.4
3
55.7
41.6
Minor BPS
64.9
0.55
1.8
83.4
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026386
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046271
18251538 - 18270841
19304