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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18282399_18285855_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18282399 - 18285855
Intron Length:
3457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTCG
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCCCACCT
Flanking Amino Acid:
LRSLEVKYTKIFINNEWHES
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.4
39.3
Major BPS
100
1.24
0.5
100
0
Major PPT
80.4
0.68
0.8
77
31.7
Minor 5ss
38.7
-1.3
2.9
47.6
48
Minor BPS
48.3
-0
2.1
75.09
41.5

Associated Gene:

Gene:
ALDH1A3
Ensembl Gene ID:
ENSAPLG00000006274
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006544
18282297 - 18316466
34170