About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18291484_18294064_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18291484 - 18294064
Intron Length:
2581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GTACACTTAATT
Flanking Amino Acid:
LLERDRVILATLETMDTGKP
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
100
1.12
0.4
100
0
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
64.8
0.54
1.5
76.75
39.1

Associated Gene:

Gene:
ALDH1A3
Ensembl Gene ID:
ENSAPLG00000006274
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006544
18282297 - 18316466
34170