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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18295487_18298199_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18295487 - 18298199
Intron Length:
2713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAC
U12 Branch Point Sequence:
TCCAACTGACCT
Flanking Amino Acid:
PMGVCGAITPWNFPLLMLVW
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72
39.5
Major BPS
64.8
0.37
0.9
55.1
32.8
Major PPT
83.2
0.75
0.9
77.3
37
Minor 5ss
33.3
-1.9
2.9
41.4
44.7
Minor BPS
45.7
-0.2
1.9
62.41
47

Associated Gene:

Gene:
ALDH1A3
Ensembl Gene ID:
ENSAPLG00000006274
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006544
18282297 - 18316466
34170