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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18298329_18300508_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18298329 - 18300508
Intron Length:
2180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
ACCTCTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCAAAAT
U12 Branch Point Sequence:
CTGTGCTTAACC
Flanking Amino Acid:
SLYIGSLIKEVGFPPGVVNI
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
58
0.2
1.2
63.9
38.5
Major PPT
71.8
0.49
0.9
69.2
36.3
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
67.3
0.52
1.8
73.81
43.4

Associated Gene:

Gene:
ALDH1A3
Ensembl Gene ID:
ENSAPLG00000006274
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006544
18282297 - 18316466
34170