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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18300623_18303710_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18300623 - 18303710
Intron Length:
3088

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCAATGCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAA
U12 Branch Point Sequence:
TGTGTCTCAATG
Flanking Amino Acid:
DKIAFTGSTKVGKLIKEAAS
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
81.4
32.7
Major BPS
68
0.45
1.2
71.6
36.4
Major PPT
68.6
0.42
1
60.6
40
Minor 5ss
33
-1.9
3.5
48.2
47.9
Minor BPS
53.3
-0
1.7
59.72
42.6

Associated Gene:

Gene:
ALDH1A3
Ensembl Gene ID:
ENSAPLG00000006274
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006544
18282297 - 18316466
34170