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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1830508_1830941_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1830508 - 1830941
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTGTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTTCTATAACC
Flanking Amino Acid:
KLKLHIVDIIGNEGILACRL
Intron Amino Acid Position:
1092

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
23.2
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
71.3
0.48
1.1
74.9
39
Minor 5ss
26.6
-2.7
3
30.8
43.1
Minor BPS
76.8
0.82
1.5
87.36
28.9

Associated Gene:

Gene:
AP4E1
Ensembl Gene ID:
ENSAPLG00000003399
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032903
1824566 - 1851687
27122
ENSAPLT00000003490
1829640 - 1851687
22048
ENSAPLT00000046522
1830347 - 1851214
20868