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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18324173_18340280_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18324173 - 18340280
Intron Length:
16108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAGG
5'SS Class:
major
3'SS Sequence:
ATTTTTGCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTTCCTGACAC
Flanking Amino Acid:
SRESNMDTQNGTVDMGGKQS
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
67.8
43.1
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83.1
0.75
0.9
77.8
36
Minor 5ss
34.6
-1.7
2.8
39.3
41.2
Minor BPS
54.6
0.12
1.9
68.51
42.7

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044448
18323957 - 18393172
69216
ENSAPLT00000035106
18323957 - 18396850
72894
ENSAPLT00000006260
18323957 - 18395580
71624