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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18344596_18345255_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18344596 - 18345255
Intron Length:
660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGAGAA
U12 Branch Point Sequence:
TTTTCTCTAAAG
Flanking Amino Acid:
RLPLYAAIKAGNEDVAVFLL
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
48.4
-0.1
1.1
44.5
38.7
Major PPT
77.8
0.63
1
78.8
27.4
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
62.8
0.26
1.8
73.49
38.7

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035106
18323957 - 18396850
72894
ENSAPLT00000006260
18323957 - 18395580
71624
ENSAPLT00000044448
18323957 - 18393172
69216