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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18352676_18352754_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18352676 - 18352754
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCTGTAATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTCTGTAATC
Flanking Amino Acid:
VQSSDEIICTRLLEVDVSSN
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
74
36.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
72.7
0.51
0.9
65.8
38.8
Minor 5ss
36.9
-1.5
3.2
48.2
47.9
Minor BPS
63.2
0.39
2
76.18
34.5

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006260
18323957 - 18395580
71624
ENSAPLT00000044448
18323957 - 18393172
69216
ENSAPLT00000035106
18323957 - 18396850
72894