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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18353201_18353266_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18353201 - 18353266
Intron Length:
66

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTGGA
5'SS Class:
major
3'SS Sequence:
TGAATGTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
AGTCCCTAAACA
Flanking Amino Acid:
KLQEFDVSDNRNQLKVFPDP
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.2
64.5
41.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
71.9
0.49
1
61.8
48.2
Minor 5ss
27
-2.6
3.1
32.5
42.2
Minor BPS
64.1
0.44
1.7
72.43
39

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006260
18323957 - 18395580
71624