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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18353310_18353865_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18353310 - 18353865
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTATG
Flanking Amino Acid:
VFPDPWACPLKCCKASRNLL
Intron Amino Acid Position:
396

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85
0.79
0.9
77.1
41.8
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
68.5
0.44
1.6
74.98
37.4

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044448
18323957 - 18393172
69216
ENSAPLT00000035106
18323957 - 18396850
72894
ENSAPLT00000006260
18323957 - 18395580
71624