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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18354004_18357462_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18354004 - 18357462
Intron Length:
3459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTCTTCTAACT
Flanking Amino Acid:
EVPLGLFQLESLVSLKLLGN
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.5
28.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
79.7
0.67
0.7
77.6
30.4
Minor 5ss
39
-1.2
3.3
52.8
38.5
Minor BPS
59.8
0.39
1.7
78.64
37.2

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006260
18323957 - 18395580
71624
ENSAPLT00000044448
18323957 - 18393172
69216
ENSAPLT00000035106
18323957 - 18396850
72894