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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18358804_18362132_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18358804 - 18362132
Intron Length:
3329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TATGTTTTAAAG
Flanking Amino Acid:
RSRVRCGPEAGPFLEFPAFL
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
73.9
38
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83
0.74
0.9
80.5
37
Minor 5ss
37.1
-1.5
3.3
50.2
46.4
Minor BPS
57
0.08
1.6
60.98
41.1

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006260
18323957 - 18395580
71624
ENSAPLT00000044448
18323957 - 18393172
69216
ENSAPLT00000035106
18323957 - 18396850
72894