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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18362263_18362796_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18362263 - 18362796
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTGTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACACAA
U12 Branch Point Sequence:
TGTTTTTGTACA
Flanking Amino Acid:
LKGLTELYLGNNPGIRELPP
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
74.4
36
Major BPS
49.3
-0
0.9
56.6
29.3
Major PPT
84.1
0.77
0.9
79.9
37.7
Minor 5ss
36.2
-1.6
2.9
43
37.7
Minor BPS
52.4
0.07
1.8
68.24
38.3

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044448
18323957 - 18393172
69216
ENSAPLT00000035106
18323957 - 18396850
72894
ENSAPLT00000006260
18323957 - 18395580
71624