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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18363995_18366044_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18363995 - 18366044
Intron Length:
2050

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAAC
5'SS Class:
major
3'SS Sequence:
TTTGTCTAAGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTGATTTGAACA
Flanking Amino Acid:
LPKPVGHKAKVDSVEFNVWD
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
0.9
73.6
30.2
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
70.2
0.46
1
67.9
37.9
Minor 5ss
27.7
-2.6
2.9
33.7
41.9
Minor BPS
59
0.28
1.4
68.34
38.1

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035106
18323957 - 18396850
72894
ENSAPLT00000006260
18323957 - 18395580
71624
ENSAPLT00000044448
18323957 - 18393172
69216