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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18368451_18370438_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18368451 - 18370438
Intron Length:
1988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ATGACTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
CCTTGCATGACT
Flanking Amino Acid:
GFPDITFKHLHELSCKTLEG
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
76.3
0.59
0.9
69.7
40.8
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
49.9
0.08
2.1
71.81
45.4

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044448
18323957 - 18393172
69216
ENSAPLT00000035106
18323957 - 18396850
72894
ENSAPLT00000006260
18323957 - 18395580
71624