Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1837445_1838176_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1837445 - 1838176

Intron Length:

732

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGATAA

5'SS Class:

strong_major

3'SS Sequence:

TAATTCTGCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TTTTTCTTAATT

Flanking Amino Acid:

PFDASCNDMVVDASLSFLDG

Intron Amino Acid Position:

617

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

75.7

29.2

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

66.3

0.37

62.4

39.2

Minor 5ss

37.4

-1.4

44.1

44.7

Minor BPS

90.1

1.34

0.7

99.4

21.6

Associated Gene:

Gene:

AP4E1

Ensembl Gene ID:

ENSAPLG00000003399

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046522

1830347 - 1851214

20868

ENSAPLT00000032903

1824566 - 1851687

27122

ENSAPLT00000003490

1829640 - 1851687

22048