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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18374682_18376103_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18374682 - 18376103
Intron Length:
1422

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TAACAATTATCA
Flanking Amino Acid:
LISLAEMDLQLFENKKDTKT
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.4
32.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
83.4
0.75
0.9
80.8
36.8
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
45.6
-0.3
2
57.98
40.3

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044448
18323957 - 18393172
69216
ENSAPLT00000035106
18323957 - 18396850
72894
ENSAPLT00000006260
18323957 - 18395580
71624