Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18383317_18384139_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18383317 - 18384139

Intron Length:

823

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGAGAC

5'SS Class:

strong_major

3'SS Sequence:

CCTTTCCCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GATTCAT

U12 Branch Point Sequence:

CTTTCCCCACAG

Flanking Amino Acid:

MECWDTKPEKRPLAISVVGR

Intron Amino Acid Position:

1478

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

69.7

35.3

Major BPS

74.4

0.61

1.2

77.7

37.1

Major PPT

78.4

0.64

0.7

72.4

25.9

Minor 5ss

29.7

-2.3

3.5

40.9

45.7

Minor BPS

42.9

-0.6

2.2

53.67

46.6

Associated Gene:

Gene:

LRRK1

Ensembl Gene ID:

ENSAPLG00000005994

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006260

18323957 - 18395580

71624

ENSAPLT00000044448

18323957 - 18393172

69216

ENSAPLT00000035106

18323957 - 18396850

72894