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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18385992_18387297_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18385992 - 18387297
Intron Length:
1306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTATTGGATT
Flanking Amino Acid:
FQNALWAATEDQKISVYGLQ
Intron Amino Acid Position:
1568

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
83.7
0.76
0.8
79.1
32.9
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
53.5
0.19
1.6
74.75
35.9

Associated Gene:

Gene:
LRRK1
Ensembl Gene ID:
ENSAPLG00000005994
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006260
18323957 - 18395580
71624
ENSAPLT00000044448
18323957 - 18393172
69216
ENSAPLT00000035106
18323957 - 18396850
72894