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Intron Name: Anas_platyrhynchos_platyrhynchos_11_18393299_18393888_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18393299 - 18393888

Intron Length:

590

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GGTACAA

U12 Branch Point Sequence:

GCAGGTACAACC

Flanking Amino Acid:

LAVKDLIWIPRRGGDIIVIG

Intron Amino Acid Position:

1885

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.3

1.02

0.8

76.2

39.9

Major BPS

46.3

-0.2

1.3

52.7

43.2

Major PPT

85.9

0.81

0.8

77.4

36.9

Minor 5ss

32.1

-2

3.1

40.6

45.6

Minor BPS

37.2

-0.9

40.69

39.1

Associated Gene:

Gene:

LRRK1

Ensembl Gene ID:

ENSAPLG00000005994

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035106

18323957 - 18396850

72894

ENSAPLT00000006260

18323957 - 18395580

71624