Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1841154_1841442_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1841154 - 1841442

Intron Length:

289

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTCAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCAAAT

U12 Branch Point Sequence:

AACCAATCAAAT

Flanking Amino Acid:

DHPDPIIKRETLEILYRITN

Intron Amino Acid Position:

392

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

1.2

77.6

32.8

Major BPS

68.5

0.46

73.3

28.9

Major PPT

90.4

0.91

0.6

88.5

Minor 5ss

27.4

-2.6

2.9

31.8

42.6

Minor BPS

40.9

-0.6

1.9

53.76

40.2

Associated Gene:

Gene:

AP4E1

Ensembl Gene ID:

ENSAPLG00000003399

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046522

1830347 - 1851214

20868

ENSAPLT00000032903

1824566 - 1851687

27122

ENSAPLT00000003490

1829640 - 1851687

22048