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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18451260_18458021_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18451260 - 18458021
Intron Length:
6762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGAGA
5'SS Class:
major
3'SS Sequence:
TTTTGCCACCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
GCATGCTCAATT
Flanking Amino Acid:
YLRSRAVAAHRTWSKTIPGK
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
66.1
41.1
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
70.6
0.46
0.9
63.3
38.5
Minor 5ss
26.7
-2.7
3
31.3
42.6
Minor BPS
49.4
0.04
2
65.74
44.9

Associated Gene:

Gene:
CHSY1
Ensembl Gene ID:
ENSAPLG00000005992
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006201
18404749 - 18458320
53572