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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1845943_1846513_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1845943 - 1846513
Intron Length:
571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTATT
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTTTGTGTAAAT
Flanking Amino Acid:
PLIEDKLQHSKEIIRRKAVQ
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
84.8
32.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
86.9
0.83
0.7
84.9
29.5
Minor 5ss
42.3
-0.8
3.1
59.9
38.7
Minor BPS
49.8
0.07
2.4
80.63
41.5

Associated Gene:

Gene:
AP4E1
Ensembl Gene ID:
ENSAPLG00000003399
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046522
1830347 - 1851214
20868
ENSAPLT00000032903
1824566 - 1851687
27122
ENSAPLT00000003490
1829640 - 1851687
22048