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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1846636_1847912_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1846636 - 1847912
Intron Length:
1277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
ATGTTTGTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATGTTTGTAATA
Flanking Amino Acid:
LLLLVNTVVKDLQSTNLVEV
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
66.7
0.38
1
62.7
42.6
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
51.2
0.03
2
64.28
37.1

Associated Gene:

Gene:
AP4E1
Ensembl Gene ID:
ENSAPLG00000003399
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046522
1830347 - 1851214
20868
ENSAPLT00000032903
1824566 - 1851687
27122
ENSAPLT00000003490
1829640 - 1851687
22048