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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18468000_18469960_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18468000 - 18469960
Intron Length:
1961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
TGAGTATTAACA
Flanking Amino Acid:
KPNKKPLRGGGYNPLSGEGG
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
78.2
0.64
0.9
70.2
41.3
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
56
0.19
1.7
65.92
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005939
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006157
18467920 - 18472483
4564