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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18470814_18471920_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18470814 - 18471920
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTCAGTAAA
5'SS Class:
major
3'SS Sequence:
TGCAATTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TATTCTGCAATT
Flanking Amino Acid:
RAGAVDAADIEPDLVVRRQE
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
74.5
37.6
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
66.3
0.37
0.9
57.7
42.8
Minor 5ss
30.9
-2.2
2.5
35
40.8
Minor BPS
52.3
0.15
2.2
77.09
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005939
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006157
18467920 - 18472483
4564