Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18473053_18473560_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18473053 - 18473560

Intron Length:

508

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCACGCGC

5'SS Class:

weak_major

3'SS Sequence:

CCTGTCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTATGAT

U12 Branch Point Sequence:

CCTCACTGAACC

Flanking Amino Acid:

GQIPGRERKPGPAEDAEEEM

Intron Amino Acid Position:

237

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.3

0.2

1.5

51.2

42.4

Major BPS

84.6

0.86

41.2

Major PPT

71.2

0.48

0.8

61.7

34.9

Minor 5ss

32.1

-2

3.2

42.9

44.1

Minor BPS

52.3

0.05

1.7

61.87

Associated Gene:

Gene:

SNRPA1

Ensembl Gene ID:

ENSAPLG00000005771

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005973

18472994 - 18478381

5388