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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18473655_18474046_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18473655 - 18474046
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACG
5'SS Class:
strong_major
3'SS Sequence:
GCCTGTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAAGAT
U12 Branch Point Sequence:
TGAAGATCCATT
Flanking Amino Acid:
PSPGDVEAIKTAIANASTLA
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
1
75.3
40.8
Major BPS
52.3
0.06
1.3
49.1
44.8
Major PPT
79.3
0.66
0.9
75.9
38
Minor 5ss
34.7
-1.7
2.9
42.7
44.3
Minor BPS
35.6
-1
2.2
51.96
42.3

Associated Gene:

Gene:
SNRPA1
Ensembl Gene ID:
ENSAPLG00000005771
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005973
18472994 - 18478381
5388