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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18475554_18476092_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18475554 - 18476092
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GGTATCGCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
ATGTTCTCAAAT
Flanking Amino Acid:
VLDFQKVKLKERQEAEKMFK
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
62.7
0.29
1
55.1
41.2
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
60.1
0.4
1.6
75.75
40.7

Associated Gene:

Gene:
SNRPA1
Ensembl Gene ID:
ENSAPLG00000005771
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005973
18472994 - 18478381
5388