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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18476196_18476319_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18476196 - 18476319
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTACTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTTGTAAACT
Flanking Amino Acid:
LSSIKSLTYLSILRNPVTNK
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
87
30
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.9
0.67
0.8
74.4
35.4
Minor 5ss
36
-1.6
3.1
50.1
46.4
Minor BPS
53.4
0.19
2.3
78.66
44.1

Associated Gene:

Gene:
SNRPA1
Ensembl Gene ID:
ENSAPLG00000005771
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005973
18472994 - 18478381
5388