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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18476367_18477293_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18476367 - 18477293
Intron Length:
927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TCCCATTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTCCCATTATGT
Flanking Amino Acid:
VLTNNNIAELGELDPLSSIK
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.1
35.6
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
70.1
0.45
0.9
65.5
34.8
Minor 5ss
44.3
-0.6
2.9
55.7
43.3
Minor BPS
47.7
-0
2.1
70.48
46

Associated Gene:

Gene:
SNRPA1
Ensembl Gene ID:
ENSAPLG00000005771
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005973
18472994 - 18478381
5388