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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18477373_18477865_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18477373 - 18477865
Intron Length:
493

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TGTTCTTCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
AACATTTGAATT
Flanking Amino Acid:
KTLLMNNNRICRIGEGLEQA
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
87.2
0.84
0.7
85.2
29.6
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
49.1
0.01
1.4
60.48
37.4

Associated Gene:

Gene:
SNRPA1
Ensembl Gene ID:
ENSAPLG00000005771
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005973
18472994 - 18478381
5388