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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_1847987_1849317_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1847987 - 1849317
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATTGGAG
5'SS Class:
weak_major
3'SS Sequence:
CTTTCTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
CTTTCTTTTATA
Flanking Amino Acid:
CLNFIWIIHSSYLAVSLFLH
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.9
0.23
1.1
52.2
38.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.8
0.85
0.6
83.7
24.5
Minor 5ss
36.4
-1.5
3.5
45.7
44.2
Minor BPS
66
0.5
1.6
74.49
37.5

Associated Gene:

Gene:
AP4E1
Ensembl Gene ID:
ENSAPLG00000003399
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046522
1830347 - 1851214
20868