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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18486394_18486606_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18486394 - 18486606
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAACAC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTGCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
TGGGTGCCAACG
Flanking Amino Acid:
DKCTACKDGFSLAGESCVPE
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.4
36.7
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
69.9
0.45
1.1
65.2
41.1
Minor 5ss
31.6
-2.1
3.2
41.7
45
Minor BPS
35.8
-1.2
2.3
40.27
43.7

Associated Gene:

Gene:
PCSK6
Ensembl Gene ID:
ENSAPLG00000005333
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005545
18483116 - 18503031
19916