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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18489521_18489682_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
18489521 - 18489682
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATCGACT
Flanking Amino Acid:
AGTRSQLLARRVFDHSNEGF
Intron Amino Acid Position:
444

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79.3
0.66
0.8
73
31.8
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
47.1
-0.1
2.3
72.66
44.3

Associated Gene:

Gene:
PCSK6
Ensembl Gene ID:
ENSAPLG00000005333
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005545
18483116 - 18503031
19916