About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18491824_18492830_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18491824 - 18492830
Intron Length:
1007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
CCTCTCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCCCAG
U12 Branch Point Sequence:
AGGGCTGCAGCT
Flanking Amino Acid:
SSGAFYERKIVTTDLRHRCT
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.3
67.5
40.3
Major BPS
40.9
-0.5
1.5
46.1
38.7
Major PPT
76.9
0.6
0.7
68.7
31.7
Minor 5ss
39.9
-1.1
2.9
49.8
41.1
Minor BPS
37.5
-0.8
2.2
50.84
43.6

Associated Gene:

Gene:
PCSK6
Ensembl Gene ID:
ENSAPLG00000005333
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005545
18483116 - 18503031
19916