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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18498940_18499147_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18498940 - 18499147
Intron Length:
208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
AAACCTTCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTAAC
U12 Branch Point Sequence:
CTAACGGTAAAA
Flanking Amino Acid:
RNHPDLLQNYDPLASYDVNG
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.3
63.1
43.4
Major BPS
63.2
0.33
1
63.6
30.5
Major PPT
71
0.47
0.9
66.7
39.4
Minor 5ss
28
-2.5
3
30.4
36.1
Minor BPS
40.7
-0.7
2.6
53.99
44.2

Associated Gene:

Gene:
PCSK6
Ensembl Gene ID:
ENSAPLG00000005333
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005545
18483116 - 18503031
19916