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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18499292_18499745_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18499292 - 18499745
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTGTC
5'SS Class:
major
3'SS Sequence:
CTCCTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAG
U12 Branch Point Sequence:
GGCTGTGGAAAT
Flanking Amino Acid:
DPVWPNMWYLHCGDRGSRCR
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
68.6
36.5
Major BPS
49.1
-0
1.5
57.8
39
Major PPT
71.2
0.48
0.8
64.8
30.8
Minor 5ss
30.9
-2.2
3.4
39.8
41.5
Minor BPS
37.3
-0.8
2.3
51.19
42.9

Associated Gene:

Gene:
PCSK6
Ensembl Gene ID:
ENSAPLG00000005333
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005545
18483116 - 18503031
19916