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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18539880_18542586_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18539880 - 18542586
Intron Length:
2707

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
CCCCTTTTAAAG
Flanking Amino Acid:
NRGKNKVFDEVKVDESLSLD
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
69
0.43
1
69
29
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
47.9
-0.3
1.5
44.62
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027780
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023814
18522850 - 18547583
24734