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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18570625_18571234_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18570625 - 18571234
Intron Length:
610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAAGG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGCAT
U12 Branch Point Sequence:
TTCTTTTCAAAG
Flanking Amino Acid:
EDVHVDKTDKMDKTAFHLAA
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.5
43.9
Major BPS
58.4
0.21
1.3
69.4
37.7
Major PPT
79.3
0.66
1
81.7
27.5
Minor 5ss
26
-2.8
3
30.8
42.8
Minor BPS
52.3
-0
1.7
60.04
42.2

Associated Gene:

Gene:
ANKDD1A
Ensembl Gene ID:
ENSAPLG00000014397
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015007
18565507 - 18573230
7724