About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18571334_18571766_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18571334 - 18571766
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATACAT
U12 Branch Point Sequence:
ATATATGTAAGA
Flanking Amino Acid:
QGCSHNAKDEENNTALHLAA
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.5
33.4
Major BPS
74.9
0.62
1
81.3
29.9
Major PPT
87.9
0.85
0.7
85.4
29.3
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
44.5
-0.4
2.3
59.2
40.6

Associated Gene:

Gene:
ANKDD1A
Ensembl Gene ID:
ENSAPLG00000014397
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015007
18565507 - 18573230
7724