Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18583066_18583242_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

18583066 - 18583242

Intron Length:

177

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTT|GTAAGTGTT

5'SS Class:

major

3'SS Sequence:

TCTCTTCCTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTCAG

U12 Branch Point Sequence:

AGAAACTCAGCC

Flanking Amino Acid:

PASNCIHTNVIIVDDDDSKV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.6

0.67

32.8

Major BPS

54.4

0.11

1.4

63.4

35.6

Major PPT

0.7

73.9

31.3

Minor 5ss

41.2

-1

3.4

64.1

41.5

Minor BPS

42.8

-0.5

1.9

49.51

39.5

Associated Gene:

Gene:

SPG21

Ensembl Gene ID:

ENSAPLG00000014668

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037897

18579057 - 18583464

4408