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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18583066_18587126_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
18583066 - 18587126
Intron Length:
4061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTCCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAG
U12 Branch Point Sequence:
AGAAACTCAGCC
Flanking Amino Acid:
WFRSTVPLKKIIVDDDDSKV
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
77.9
33
Major BPS
54.4
0.11
1.4
63.4
35.6
Major PPT
81
0.7
0.7
73.9
31.3
Minor 5ss
39.4
-1.2
2.9
50.7
45.6
Minor BPS
42.8
-0.5
1.9
49.51
39.5

Associated Gene:

Gene:
SPG21
Ensembl Gene ID:
ENSAPLG00000014668
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015314
18579057 - 18587220
8164