About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18591472_18662601_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
18591472 - 18662601
Intron Length:
71130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCCCT
5'SS Class:
major
3'SS Sequence:
TTTTCATTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATATTTTTACTT
Flanking Amino Acid:
AARLLGSARRGITCGRTRVP
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
66.3
45.2
Major BPS
100
1.24
0.5
100
0
Major PPT
86
0.81
0.7
81.9
28.7
Minor 5ss
46.1
-0.4
2.9
66.6
44.3
Minor BPS
59.8
0.39
1.5
74.15
37.4

Associated Gene:

Gene:
CLPX
Ensembl Gene ID:
ENSAPLG00000014863
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015511
18591048 - 18681292
90245