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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_18622377_18625008_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
18622377 - 18625008
Intron Length:
2632

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTCCATTGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
79.1
36.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
75.8
0.58
0.7
73.1
25.1
Minor 5ss
36.3
-1.5
3.3
49.4
46.6
Minor BPS
63
0.4
1.7
73.48
37.9

Associated Gene:

Gene:
UBAP1L
Ensembl Gene ID:
ENSAPLG00000023567
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027577
18622072 - 18632071
10000